Programação
Workshop Agenda | 08–18 June 2026
Monday, 08 June 2026 – Arthur Neiva Auditorium, IOC, Fiocruz
For all participants and invited guests – Open Lecture
Online participants:
|
Time |
Activity |
Speakers / Coordinators |
|
08:00 – 8:30 |
Credentials |
|
|
08:30–10:00 |
Welcome
|
Dra. Alda Cruz (Deputy Director Fiocruz – online) Dra. Tania Fonseca (CVSLR) Dra. Luciana Garzoni (Deputy Director – IOC) Dr. Eduardo Volotão (Deputy Director – IOC) Dra. Marilda Siqueira (LVRE, IOC, Fiocruz) Dra. Paola Resende (LVRE, IOC, Fiocruz) |
|
10:00–10:15 |
Agenda Presentation and Groups division |
Dra. Paola Resende (LVRE, IOC, Fiocruz) |
|
10:15–10:45 |
Diagnosis of Pediatric Respiratory Infections and Case Selection for mNGS |
Dr. Kazuhiro Horiba (NIID, Japão) |
|
10:45–11:15 |
Applications of Genomics and Metagenomics in Pathogen Detection and Identification |
Dr. Shota Nakamura (Universidade de Osaka, Japão) |
|
11:15–12:00 |
Questions and Discussion |
All participants |
|
12:00–14:00 |
Lunch |
|
|
14:00–14:15 |
Metagenomics Experiences – FGSN |
Dr. Felipe Naveca (Fiocruz Amazonas and IOC) |
|
14:15–14:30 |
Metagenomics Experiences – FGSN |
Dr. Fabio Miyajima (Fiocruz Ceará) |
|
14:300 14:45 |
Metagenomics Experiences – FGSN |
Dr. Gabriel Fernandes (Fiocruz Minas Gerais - online) |
|
14:45–15:00 |
Questions and Discussion |
All participants |
|
15:00–15:30 |
Coffee Break |
|
|
15:30–15:45 |
Metagenomics Experiences – FGSN |
Dr. Paola Resende (LVRE, IOC, Fiocruz) |
|
15:45–16:00 |
Metagenomics Experiences – FGSN |
Dr. Ricardo Khouri (Fiocruz, Bahia) |
|
15:30–16:30 |
Questions and Discussion |
All participants |
|
16:30 |
End of Day |
|
Only for members of the groups participating in the laboratory activities.
The laboratorial activities (09/06 to 12/06) will be conducted by Dr. Kazuhiro Horiba, Dr. Paola Resende, and Dr. Luciana Appolinário.
Tuesday, 09 June 2026 – UNADIG, Fiocruz
|
Time |
Activity |
|
09:00–10:00 |
Laboratorial instructions |
|
10:00–11:00 |
UNADIG Instructions |
|
11:00-12:00 |
Laboratory Activities: DNAse (optional) |
|
12:00–14:00 |
Lunch |
|
14:00–15:00 |
Laboratory Activities: Quality Control RNA |
|
15:00-16:30 |
Instructions for worksheet |
Wednesday, 10 June 2026 – UNADIG, Fiocruz
|
Time |
Activity |
|
09:00–10:00 |
Laboratorial instructions |
|
10:00–11:00 |
Laboratory Activities: Ribosomal RNA Depletion |
|
11:00-12:00 |
Laboratory Activities: Fragmentation and Denaturation; and 1st Strand cDNA Synthesis |
|
12:00–14:00 |
Lunch |
|
14:00–16:30 |
Laboratory Activities: 2nd Strand cDNA Synthesis |
Thursday, 11 June 2026 – UNADIG, Fiocruz
|
Time |
Activity |
|
09:00–10:00 |
Laboratorial instructions |
|
10:00-12:00 |
Laboratory Activities: 3' End Adenylation and Anchor Ligation |
|
12:00–14:00 |
Lunch |
|
14:00–15:00 |
Laboratory Activities: Library Amplification |
|
15:00-16:30 |
Laboratory Activities: Final Library Clean-up |
Friday, 12 June 2026 – UNADIG, Fiocruz
|
Time |
Activity |
|
09:00–12:00 |
Laboratory Activities: Library quality check (QC) Library normalization and pooling Flow cell loading and sequencing run |
|
12:00–14:00 |
Lunch |
|
14:00–16:30 |
Laboratory Activities |
Only for members of the groups participating in the bioinformatic activities (15/06 to 17/06). This part of the agenda will be conducted by Dr. Kazuhiro Horiba, Dr Shota Nakamura and Dr. Gabriel Wallau.
Monday, 15 June 2026 – Hotel Windsor Florida – Flamengo, Rio de Janeiro
|
Time |
Activity |
Speakers / Coordinators |
|
08:30-09:00 |
Credentials |
|
|
09:00–09:30 |
Clinical Needs and Bioinformatics Support in Infectious Disease Genomics: Experiences from Japan |
Dr. Kazuhiro Horiba |
|
09:30–10:30 |
Basic steps - sequencing QC |
Dr. Gabriel Wallau (IAM, Fiocruz, Pernambuco) |
|
10:30–11:00 |
Coffee Break |
|
|
11:00-12:00 |
Basic steps - sequencing QC |
Dr. Gabriel Wallau (IAM, Fiocruz, Pernambuco) |
|
12:00–14:00 |
Lunch |
|
|
14:00–16:30 |
Read based and assembly-based strategies |
Dr. Gabriel Wallau (IAM, Fiocruz, Pernambuco) |
Tuesday, 16 June 2026 – Hotel Windsor Florida – Flamengo, Rio de Janeiro
|
Time |
Activity |
Speakers / Coordinators |
|
09:00–10:30 |
Pipeline steps presentation and review of cases |
Dr. Gabriel Wallau (IAM, Fiocruz, Pernambuco) |
|
10:30–11:00 |
Coffee Break |
|
|
11:00-12:00 |
Bioinformatic practices - reviewing Colab and alternative pipeline executions |
Dr. Gabriel Wallau (IAM, Fiocruz, Pernambuco) |
|
12:00–14:00 |
Lunch |
|
|
14:00–16:30 |
Bioinformatic practices - Varmetagem |
Dr. Gabriel Wallau (IAM, Fiocruz, Pernambuco) |
Wednesday, 17 June 2026 – Hotel Windsor Florida – Flamengo, Rio de Janeiro
|
Time |
Activity |
Speakers / Coordinators |
|
09:00–10:30 |
Bioinformatic practices - problem solving and clarifying any doubts |
Dr. Gabriel Wallau (IAM, Fiocruz, Pernambuco) |
|
10:30–11:00 |
Coffee Break |
|
|
11:00-12:00 |
Bioinformatic practices - problem solving and clarifying any doubts |
Dr. Gabriel Wallau (IAM, Fiocruz, Pernambuco) |
|
12:00–14:00 |
Lunch |
|
|
14:00–16:30 |
Bioinformatic practices - problem solving and clarifying any doubts |
Dr. Gabriel Wallau (IAM, Fiocruz, Pernambuco) |
For all participants laboratory, bioinformaticians, clinicians and invited guests.
Thursday, 18 June 2026 – Hotel Windsor Florida – Flamengo, Rio de Janeiro
On-line participants: https://lti.mconf.rnp.br/rooms/91f9d5a0b1805ae40d7ba69f2e4322ab4c12aba7/schedule_meetings/PfTaUoumGneq/external
|
Time |
Activity |
Speakers / Coordinators |
|
08:30-09:00 |
Credentials |
|
|
09:00–10:00 |
Previous Experiences in Japan |
Dr. Kazuhiro Horiba and Dr. Shota Nakamura |
|
10:00–10:15 |
Cases Experiences: Case 1 |
Participants |
|
10:15-10:30 |
Cases Experiences: Case 2 |
Participants |
|
10:30-11:00 |
Coffee Break |
|
|
11:00-11:15 |
Cases Experiences: Case 3 |
Participants |
|
11:15-11:30 |
Cases Experiences: Case 4 |
Participants |
|
11:45-12:00 |
Cases Experiences: Case 5 |
Participants |
|
12:00-14:00 |
Lunch |
|
|
14:00-14:15 |
Cases Experiences: Case 6 |
Participants |
|
14:15-14:30 |
Cases Experiences: Case 7 |
Participants |
|
14:45-15:00 |
Cases Experiences: Case 8 |
Participants |
|
15:00-16:00 |
Discussion |
All participants |
|
16:00-16:30 |
Closing Remarks |
Dr. Kazuhiro Horiba, Dr. Shota Nakamura Dra. Paola Resende, Dr. Gabriel Wallau e Dra. Marilda Siqueira |